DISCNGINE BLOG
Insights on drug discovery trends, events, product updates, use cases, tech workflows, customer stories, and life at Discngine.
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Efficient Structure-Activity Relationship (SAR) Reporting and Exploration in Drug Discovery: Discover Discngine Ideation SAR Slides
Manual structure-activity relationship (SAR) reporting is a time-consuming, tedious, and repetitive task. To regain time from data wrangling, Discngine has developed Ideation SAR Slides - an automated platform for SAR reporting and analysis.
Read more about it here.
A new release (5.8) of the Spotfire Connector for Pipeline Pilot is available
With the recent release of TIBCO Spotfire 12.0 LTS, we are glad to announce the availability of the Discngine Connector 5.8 for Spotfire and Pipeline Pilot. This new release is fully compatible with all the supported LTS versions of Spotfire (10.10, 11.4 and 12.0) and Pipeline Pilot (2022)
Flag aggregator compounds during HTS Triage – Enhanced visualization with TIBCO Spotfire® Connector for KNIME
If you are frequently using Spotfire and KNIME you might need to jump from one tool to another all the time. In this use case, we are showing how you can do it efficiently with the Discngine connector.
Visualize your chemical space by connecting KNIME and TIBCO Spotfire®: Introduction to the SWAK
Introducing the Spotfire Web Application for KNIME (a.k.a. SWAK), a Discngine-built connector between two widely used tools in data analysis: KNIME and TIBCO Spotfire®.
Méliné is showing how simple it is to visualize a dataset’s chemical space by building a KNIME workflow projecting the dataset onto the chemical space, before visualizing it efficiently with TIBCO Spotfire® through the SWAK!
Structure-based lead optimization of a PROTAC small-molecule in the BRD4-CRBN complex
The purpose of this article is to illustrate how to apply some of 3decision’s features in scientific research. For this use case, the 3decision Subpocket Similarity Search is used to suggest modifications for the optimization of a small- molecule PROTAC. The Protein-Ligand interaction coloring by statistics is then used to evaluate docking poses of new compounds. The bromodomain-containing protein 4 – cereblon complex (BRD4-CBRN) and its degrader dBET23 are used as an example.
Starting with 3decision®: Allosteric pocket detection in BCR-ABL1 kinase
I found my way to quickly learn new software: by validating its features. In this article, I am presenting the retrospective analysis of the detection of BCR-ABL1 allosteric binding site using the 3decision Pocket Explorer feature.
What's new in 3decision® 2021.1?
The updated 3decision® version has some important new features for cross-team collaboration and structure-based drug design project management. A lot of improvements are made on the structure visualization UI as well.
Spotting differences in large structure collections
This short post shows how to quickly analyze larger collections of structures and check for common and different parts among such large sets of structures.
Getting ready for AlphaFold with 3decision®
Google-owned company DeepMind has achieved to predict 3D protein shapes with high accuracy and speed using the AI program AlphaFold. Although still in the early phase, this method can have a significant impact on drug discovery, accelerating the development of new drugs. In this article, we are discussing the importance of getting ready for the new source of structural data and how to gain the most of structural knowledge.